Quantcast
Channel: Intel® Software - Intel® oneAPI Math Kernel Library & Intel® Math Kernel Library
Viewing all articles
Browse latest Browse all 3005

Re-use cluster pardiso factorization crashed

$
0
0

I'm trying to use cluster pardiso to solve large equations with complex hermitian matrix. I have multiple (>1000) right hand side but matrix A is the same, so I do phase 11 and 22 factorization first, then want reuse the factorization to solve the equation with multiple right hand side. I know pardiso has the capability to solve all the right hand side by one call, but it had memory issues due to the very large size of my matrix. So I tried do phase 11 & 22 first, then read each right hand side from binary file and solve phase 33 in a do loop. For the first 20 or so right hand side, the code runs good and it seems calculate the correct solution, but then the program crashes. I believe there might be some memory leaks.

Any suggestions/ideas are welcome, here is the error message, I run the code on 4 nodes. line 171 is where I call pardiso in phase 33. Thanks.

forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line        Source            
z2d.exe            0000000005A33DC5  Unknown               Unknown  Unknown
z2d.exe            0000000005A319E7  Unknown               Unknown  Unknown
z2d.exe            00000000059EDD14  Unknown               Unknown  Unknown
z2d.exe            00000000059EDB26  Unknown               Unknown  Unknown
z2d.exe            00000000059B0B36  Unknown               Unknown  Unknown
z2d.exe            00000000059B411E  Unknown               Unknown  Unknown
libpthread.so.0    00000036B220F710  Unknown               Unknown  Unknown
z2d.exe            00000000059B4040  Unknown               Unknown  Unknown
libpthread.so.0    00000036B220F710  Unknown               Unknown  Unknown
libmpi.so.12       00002B23E8A8BEE0  Unknown               Unknown  Unknown
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line        Source            
z2d.exe            0000000005A33DC5  Unknown               Unknown  Unknown
z2d.exe            0000000005A319E7  Unknown               Unknown  Unknown
z2d.exe            00000000059EDD14  Unknown               Unknown  Unknown
z2d.exe            00000000059EDB26  Unknown               Unknown  Unknown
z2d.exe            00000000059B0B36  Unknown               Unknown  Unknown
z2d.exe            00000000059B411E  Unknown               Unknown  Unknown
libpthread.so.0    0000003A8BC0F710  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F3490FB2  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32D6FBC  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F33E2E39  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F33E347A  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32C2788  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32C100A  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32C02CF  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32C3A2B  Unknown               Unknown  Unknown
libmpi.so.12       00002B21F32C343E  Unknown               Unknown  Unknown
z2d.exe            00000000015DCDE2  Unknown               Unknown  Unknown
z2d.exe            00000000005D3CEB  Unknown               Unknown  Unknown
z2d.exe            0000000000557699  Unknown               Unknown  Unknown
z2d.exe            0000000000553999  MAIN__                    171  z2d_1by1.f90
z2d.exe            0000000000552C1E  Unknown               Unknown  Unknown
libc.so.6          0000003A8B81ED1D  Unknown               Unknown  Unknown
z2d.exe            0000000000552B29  Unknown               Unknown  Unknown
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line        Source            
z2d.exe            0000000005A33DC5  Unknown               Unknown  Unknown
z2d.exe            0000000005A319E7  Unknown               Unknown  Unknown
z2d.exe            00000000059EDD14  Unknown               Unknown  Unknown
z2d.exe            00000000059EDB26  Unknown               Unknown  Unknown
z2d.exe            00000000059B0B36  Unknown               Unknown  Unknown
z2d.exe            00000000059B411E  Unknown               Unknown  Unknown
libpthread.so.0    0000003B9840F710  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB7954A0  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB8C5FD0  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB70BFBC  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB817E39  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB81847A  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB6F7788  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB6F600A  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB6F52CF  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB6F8A2B  Unknown               Unknown  Unknown
libmpi.so.12       00002B5AFB6F843E  Unknown               Unknown  Unknown
z2d.exe            00000000015DCDE2  Unknown               Unknown  Unknown
z2d.exe            00000000005D3CEB  Unknown               Unknown  Unknown
z2d.exe            0000000000557699  Unknown               Unknown  Unknown
z2d.exe            0000000000553999  MAIN__                    171  z2d_1by1.f90
z2d.exe            0000000000552C1E  Unknown               Unknown  Unknown
libc.so.6          0000003B9801ED1D  Unknown               Unknown  Unknown
z2d.exe            0000000000552B29  Unknown               Unknown  Unknown
forrtl: error (78): process killed (SIGTERM)
Image              PC                Routine            Line        Source            
z2d.exe            0000000005A33DC5  Unknown               Unknown  Unknown
z2d.exe            0000000005A319E7  Unknown               Unknown  Unknown
z2d.exe            00000000059EDD14  Unknown               Unknown  Unknown
z2d.exe            00000000059EDB26  Unknown               Unknown  Unknown
z2d.exe            00000000059B0B36  Unknown               Unknown  Unknown
z2d.exe            00000000059B411E  Unknown               Unknown  Unknown
libpthread.so.0    000000382FC0F710  Unknown               Unknown  Unknown
z2d.exe            00000000059B4040  Unknown               Unknown  Unknown
libpthread.so.0    000000382FC0F710  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD1016F800  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FFB114B  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD100BCE39  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD100BCB32  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FF962F9  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FF95D5D  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FF95BDC  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FF95B0C  Unknown               Unknown  Unknown
libmpi.so.12       00002AAD0FF97932  Unknown               Unknown  Unknown
z2d.exe            00000000015DCCB9  Unknown               Unknown  Unknown
z2d.exe            00000000005C59D5  Unknown               Unknown  Unknown
z2d.exe            0000000000557A80  Unknown               Unknown  Unknown
z2d.exe            0000000000553999  MAIN__                    171  z2d_1by1.f90
z2d.exe            0000000000552C1E  Unknown               Unknown  Unknown
libc.so.6          000000382F81ED1D  Unknown               Unknown  Unknown
z2d.exe            0000000000552B29  Unknown               Unknown  Unknown

Thread Topic: 

Help Me

Viewing all articles
Browse latest Browse all 3005

Trending Articles



<script src="https://jsc.adskeeper.com/r/s/rssing.com.1596347.js" async> </script>